Surse și bibliografie

Peștera Movile și biospeologie

1. Sarbu, S. M., Kane, T. C., & Kinkle, B. K. (1996). A chemoautotrophically based cave ecosystem. Science, 272(5270), 1953–1955. doi:10.1126/science.272.5270.1953
2. Chen, Y., Wu, L., Boden, R., et al. (2009). Life without light: microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave. The ISME Journal, 3, 1093–1104. doi:10.1038/ismej.2009.57
3. Kumaresan, D., Wischer, D., Stephenson, J., et al. (2014). Microbiology of Movile Cave: a chemolithoautotrophic ecosystem. Geomicrobiology Journal, 31(3), 186–193. doi:10.1080/01490451.2013.839764
4. GESS: Grupul de Explorări Subacvatice și Speologice. Movile Cave. gesslab.org/movile-cave
5. Racoviță, E. (1907). Essai sur les problèmes biospéologiques. Archives de Zoologie Expérimentale et Générale, seria 4, 6, 371–488.
6. Corliss, J. B., Dymond, J., Gordon, L. I., et al. (1979). Submarine thermal springs on the Galápagos Rift. Science, 203(4385), 1073–1083. doi:10.1126/science.203.4385.1073

Istoria microbiologiei

1. Leeuwenhoek, A. van (1684). An abstract of a letter from Mr. Anthony Leevvenhoeck… concerning animalcula in the scurf of the teeth. Philosophical Transactions of the Royal Society, 14, 568–574.
2. Pasteur, L. (1861). Animalcules infusoires vivant sans gaz oxygène libre et déterminant des fermentations. Comptes Rendus de l'Académie des Sciences, 52, 344–347.
3. Escherich, T. (1886). Die Darmbakterien des Säuglings und ihre Beziehungen zur Physiologie der Verdauung. Stuttgart: Enke.
4. Winogradsky, S. (1887). Über Schwefelbacterien. Botanische Zeitung, 45.
5. Tissier, H. (1900). Recherches sur la flore intestinale des nourrissons (état normal et pathologique). Teză de doctorat, Paris.
6. Metchnikoff, É. (1907). Essais optimistes. Paris: Maloine. Tradusă în engleză ca The Prolongation of Life.
7. Sonnenborn, U. (2016). Escherichia coli strain Nissle 1917: from bench to bedside and back. FEMS Microbiology Letters, 363(19), fnw212. doi:10.1093/femsle/fnw212
8. Hungate, R. E. (1950). The anaerobic mesophilic cellulolytic bacteria. Bacteriological Reviews, 14(1), 1–49.
9. Eiseman, B., Silen, W., Bascom, G. S., & Kauvar, A. J. (1958). Fecal enema as an adjunct in the treatment of pseudomembranous enterocolitis. Surgery, 44(5), 854–859.
10. Woese, C. R., & Fox, G. E. (1977). Phylogenetic structure of the prokaryotic domain: the primary kingdoms. PNAS, 74(11), 5088–5090. doi:10.1073/pnas.74.11.5088
11. Woese, C. R., Kandler, O., & Wheelis, M. L. (1990). Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. PNAS, 87(12), 4576–4579. doi:10.1073/pnas.87.12.4576
12. Staley, J. T., & Konopka, A. (1985). Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annual Review of Microbiology, 39, 321–346.
13. Pace, N. R. (1997). A molecular view of microbial diversity and the biosphere. Science, 276(5313), 734–740. doi:10.1126/science.276.5313.734

Etimologie

1. Mohr, J. L. (1952). Protozoa as indicators of pollution. The Scientific Monthly, 74(1), 7–9.
2. Whipps, J. M., Lewis, K., & Cooke, R. C. (1988). Mycoparasitism and plant disease control. În M. N. Burge (ed.), Fungi in Biological Control Systems (pp. 161–187). Manchester University Press.
3. Lederberg, J., & McCray, A. T. (2001). ’Ome sweet ’omics: a genealogical treasury of words. The Scientist, 15(7), 8.
4. Prescott, S. L. (2017). History of medicine: origin of the term microbiome and why it matters. Human Microbiome Journal, 4, 24–25. doi:10.1016/j.humic.2017.05.004
5. Marchesi, J. R., & Ravel, J. (2015). The vocabulary of microbiome research: a proposal. Microbiome, 3, 31. doi:10.1186/s40168-015-0094-5
6. Berg, G., Rybakova, D., Fischer, D., et al. (2020). Microbiome definition re-visited: old concepts and new challenges. Microbiome, 8, 103. doi:10.1186/s40168-020-00875-0
7. American Society for Microbiology (2019). Microbiomes: An Origin Story. asm.org

Microbiomul uman

1. Hooper, L. V., & Gordon, J. I. (2001). Commensal host-bacterial relationships in the gut. Science, 292(5519), 1115–1118. doi:10.1126/science.1058709
2. Bäckhed, F., Ding, H., Wang, T., et al. (2004). The gut microbiota as an environmental factor that regulates fat storage. PNAS, 101(44), 15718–15723. doi:10.1073/pnas.0407076101
3. Eckburg, P. B., Bik, E. M., Bernstein, C. N., et al. (2005). Diversity of the human intestinal microbial flora. Science, 308(5728), 1635–1638. doi:10.1126/science.1110591
4. Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., et al. (2006). An obesity-associated gut microbiome with increased capacity for energy harvest. Nature, 444, 1027–1031. doi:10.1038/nature05414
5. Turnbaugh, P. J., Ley, R. E., Hamady, M., et al. (2007). The Human Microbiome Project. Nature, 449, 804–810. doi:10.1038/nature06244
6. Qin, J., Li, R., Raes, J., et al. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature, 464, 59–65. doi:10.1038/nature08821
7. The Human Microbiome Project Consortium (2012). Structure, function and diversity of the healthy human microbiome. Nature, 486, 207–214. doi:10.1038/nature11234
8. Yatsunenko, T., Rey, F. E., Manary, M. J., et al. (2012). Human gut microbiome viewed across age and geography. Nature, 486, 222–227. doi:10.1038/nature11053
9. van Nood, E., Vrieze, A., Nieuwdorp, M., et al. (2013). Duodenal infusion of donor feces for recurrent Clostridium difficile. New England Journal of Medicine, 368, 407–415. doi:10.1056/NEJMoa1205037
10. Sender, R., Fuchs, S., & Milo, R. (2016). Revised estimates for the number of human and bacteria cells in the body. PLoS Biology, 14(8), e1002533. doi:10.1371/journal.pbio.1002533
11. Almeida, A., Mitchell, A. L., Boland, M., et al. (2019). A new genomic blueprint of the human gut microbiota. Nature, 568, 499–504. doi:10.1038/s41586-019-0965-1
12. Pasolli, E., Asnicar, F., Manara, S., et al. (2019). Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle. Cell, 176(3), 649–662. doi:10.1016/j.cell.2019.01.001

Sănătate, alimentație și definiții

1. David, L. A., Maurice, C. F., Carmody, R. N., et al. (2014). Diet rapidly and reproducibly alters the human gut microbiome. Nature, 505, 559–563. doi:10.1038/nature12820
2. McDonald, D., Hyde, E., Debelius, J. W., et al. (2018). American Gut: an open platform for citizen science microbiome research. mSystems, 3(3), e00031-18. doi:10.1128/mSystems.00031-18
3. Suez, J., Zmora, N., Zilberman-Schapira, G., et al. (2018). Post-antibiotic gut mucosal microbiome reconstitution is impaired by probiotics and improved by autologous FMT. Cell, 174(6), 1406–1423. doi:10.1016/j.cell.2018.08.047
4. Wastyk, H. C., Fragiadakis, G. K., Perelman, D., et al. (2021). Gut-microbiota-targeted diets modulate human immune status. Cell, 184(16), 4137–4153. doi:10.1016/j.cell.2021.06.019
5. DeFilipp, Z., Bloom, P. P., Torres Soto, M., et al. (2019). Drug-resistant E. coli bacteremia transmitted by fecal microbiota transplant. New England Journal of Medicine, 381, 2043–2050. doi:10.1056/NEJMoa1910437
6. Hill, C., Guarner, F., Reid, G., et al. (2014). The ISAPP consensus statement on the scope and appropriate use of the term probiotic. Nature Reviews Gastroenterology & Hepatology, 11, 506–514. doi:10.1038/nrgastro.2014.66
7. Gibson, G. R., Hutkins, R., Sanders, M. E., et al. (2017). The ISAPP consensus statement on the definition and scope of prebiotics. Nature Reviews Gastroenterology & Hepatology, 14, 491–502. doi:10.1038/nrgastro.2017.75
8. Salminen, S., Collado, M. C., Endo, A., et al. (2021). The ISAPP consensus statement on the definition and scope of postbiotics. Nature Reviews Gastroenterology & Hepatology, 18, 649–667. doi:10.1038/s41575-021-00440-6
9. EFSA Panel on Dietetic Products, Nutrition and Allergies (2010). Scientific opinion on dietary reference values for carbohydrates and dietary fibre. EFSA Journal, 8(3), 1462. doi:10.2903/j.efsa.2010.1462

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